School of Education and Social Sciences
- MEd Educational Studies: Curriculum and Instruction
- Master in Special Education
- MSc in Education for Sustainable Development and Social Change
- Master in Educational Administration and Leadership
- Master in Adult Education
- Master in Quality Assurance offered by the School of Engineering and the School of Education and Social Science
- MEd in Intercultural Studies and Greek as a 2nd Language offered by the School of Education and Social Sciences (Frederick University) and the Faculty of Social Sciences and Humanities (University of Western Macedonia)
School of Health Sciences
- Master in Health Management offered by the School of Health Sciences and the School of Business and Law
- Master in Community Health
School of Business and Law
- Bachelor in Business Administration
- Master in Business Administration (MBA) (Greek)
- Master in Business Administration (MBA) (English)
- Master in Health Management offered by the School of Health Sciences and the School of Business and Law
- Master in International Trade and Shipping Management
- MA/LLM in Maritime Law and Shipping Management
- Master in European Law offered by the Department of Law, Frederick University, and the School of Social Sciences, Hellenic Open University
School of Engineering
- Master in Conservation and Restoration of Historical Structures and Monuments
- MSc in Web and Smart Systems
- Specialization in Smart Systems
- Specialization in Web Systems
School of Engineering, Frederick University and Faculty of Pure and Applied Sciences, Open University Cyprus
- Master in Sustainable Energy Systems offered by School of Engineering, Frederick University Faculty of Pure and Applied Sciences, Open University Cyprus